Protein Info for SMc04010 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 562 PF05951: Peptidase_M15_2" amino acids 7 to 158 (152 residues), 263.2 bits, see alignment E=5.9e-83 PF08291: Peptidase_M15_3" amino acids 59 to 151 (93 residues), 34.1 bits, see alignment E=2.5e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_2849)

Predicted SEED Role

"protein of unknown function DUF882"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92JX1 at UniProt or InterPro

Protein Sequence (562 amino acids)

>SMc04010 hypothetical protein (Sinorhizobium meliloti 1021)
MAPPVEAAGQTRTLKLYFIHTKEKAQITYKRNGRYDQKGLQQINRFLRDWRRNEPTKMDP
RLLDLVWEVYQKSGSRDYIHVVSAYRSPATNGMLRSRSKGVAKKSQHMLGKAMDFYIPDV
KLKTLREVGMKFQVGGVGYYPTSGSPFVHMDVGGVRAWPRMTRNELARLFPDGKTMHIPS
DGRPLPGYEQAVADYKRRVGASAIEVAGGGAKGPGDTGKRRNLFAALFGGGGDEDEEPAA
IAAGGAEEEAPAKVQTASAPAARDALPGVAGSTAAPAEQDINAPVPAVRPAFKETPADGG
VAVALVAPEKNSAQEALAAAMQPTTAVPSEFADLSALKVPVPQMLDRRDMNALIANETLV
ASADGQAQEFGFVPVPGMRPAGEEALAAVAHAEVTIPASADRPALASAAQPPAAGTRVAL
AAPTSEDRTPAFSPAIEVAAYAPQPGSASREAIFDSVFDTEADAPSKGARPKRQDAEAKS
RSSVRTEPKLTKKIISEWALSAGRVATLSKPVKAPRFVSKSLRVAPTTVYAAGFTSNSGA
VDTARFSGSAVNFMEVKKFSTN