Protein Info for SMc03838 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 863 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 42 to 62 (21 residues), see Phobius details amino acids 281 to 302 (22 residues), see Phobius details amino acids 311 to 331 (21 residues), see Phobius details amino acids 336 to 362 (27 residues), see Phobius details amino acids 371 to 396 (26 residues), see Phobius details amino acids 417 to 440 (24 residues), see Phobius details amino acids 446 to 472 (27 residues), see Phobius details amino acids 493 to 517 (25 residues), see Phobius details amino acids 739 to 761 (23 residues), see Phobius details amino acids 791 to 813 (23 residues), see Phobius details amino acids 828 to 851 (24 residues), see Phobius details PF02687: FtsX" amino acids 284 to 402 (119 residues), 37.2 bits, see alignment E=1.3e-13 amino acids 743 to 854 (112 residues), 43.6 bits, see alignment E=1.3e-15

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to smk:Sinme_3218)

Predicted SEED Role

"ABC transporter, permease protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92L62 at UniProt or InterPro

Protein Sequence (863 amino acids)

>SMc03838 hypothetical protein (Sinorhizobium meliloti 1021)
MSGTVAARRLRPMISLRPLLALRPLFALRLALREMRGGLRGFYIFLACIALGTAAIAGVN
SLSQSISETIASQGQELLAGDIRFELNNRVATADERAFLQGLGQVSVSAGLRSMARLPDG
SNQALVELKAVDGAYPLYGKLESEPAKPLPELLAKDGEVFGAVAAPLLLERLGISPGAEI
LIGNARIRIGATLASEPDALSDGFGFAPRLMISSDALAASGLVQTGSLVEHTYKVRLPDP
ADVPLIRVQAETRFPSAGWSIRTSGNAAPSLNANITRFSQFLTLVGLTALIVGGVGVANA
VRSYLDGKRSVIATFKCLGAPASLVAMIYLAQILMIALIGIAIGLVLGALIPFVAAQFLA
GLLPVSTAFVLYPSALGLAALFGLLTALTFAILPLGRARRVPATALFRQQGFEPTGLPAL
PYLAGAFICLAALAGLAVWTAYDRYISLIFLGAIAFAFIVLRGVSLLISWLARRSPRVNS
PALRLAIGNIHRPGALTPSVVLSLGLGLALLVTLALIDGNLRRELTGDMAERAPNFFFVD
IQGSEIEGFRSLLAGAMPEGKIIEVPMLRGRIVALNGEDVNSRNVPPGGQWVLRGDRGIT
YARNRPENSKLTEGSWWPEDYGGEPLVSFSAEEARELGLKLGDTVTVNVLGRNITARIAN
FREVEWESLSINFVMVFSPNTFAGAPHAWLATIIDPDASAEEEAAVLKRVTNAYPTITSV
RVKDALDIVNTLLGQLATAVRAAAAVALIASILVLAGALAAGNRARIHDAVVLKTLGATR
ATLIRAFSYEYVILGLATAVFALFAGGVSAWFVVSRIMTLPSSFLPDVAVATIVLALVVT
VGIGLAGTWRVLGQKAAPVLREL