Protein Info for SMc03827 in Sinorhizobium meliloti 1021

Annotation: amino acid efflux transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 43 to 69 (27 residues), see Phobius details amino acids 75 to 93 (19 residues), see Phobius details amino acids 113 to 138 (26 residues), see Phobius details amino acids 154 to 179 (26 residues), see Phobius details amino acids 191 to 209 (19 residues), see Phobius details PF01810: LysE" amino acids 19 to 207 (189 residues), 111.1 bits, see alignment E=2.5e-36

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_3207)

Predicted SEED Role

"FIG097019: Amino acid efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92L72 at UniProt or InterPro

Protein Sequence (213 amino acids)

>SMc03827 amino acid efflux transmembrane protein (Sinorhizobium meliloti 1021)
MDFVPSLPTLIAFAAASLLLAATPGPDMTLSITRALAQGKKAALFVVVGTGLGIVVHTLL
VAFGISALITASPTAFLVLKTGGAAYLLWLAIQAIRYGSSLSVTKVTEAKGTILSNIATG
FSVNILNPKVVIFFMTFLPQFVTANDPAVTGKLLFLGFFFIAIGMPVNALVVLAADWLAA
WLQRNRRVMRAIDYGFAGVFSIFAVKIFFTQTR