Protein Info for SMc03260 in Sinorhizobium meliloti 1021

Annotation: transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 transmembrane" amino acids 425 to 439 (15 residues), see Phobius details PF05598: DUF772" amino acids 54 to 116 (63 residues), 25.6 bits, see alignment E=9.9e-10 PF01609: DDE_Tnp_1" amino acids 303 to 435 (133 residues), 49.5 bits, see alignment E=4.7e-17

Best Hits

KEGG orthology group: None (inferred from 99% identity to smk:Sinme_6381)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (444 amino acids)

>SMc03260 transposase (Sinorhizobium meliloti 1021)
MRQERTVQGSIFDLFAEHEIGRELEAMSQWLDAHRDLLNLVTSDLRRQGVTETGRQGLPS
EAVLRCALLKQYRQLSYEELAFHLEDSASFRAFARLPWGWSPKKSVLHKTISAIRADTWE
AVNKMLLASARQERLESGRVVRVDSTVTAALIHEPSDSSLLWDCVRVMVRLLQQADSLGS
TIPWHDHCRAAKKRARVIEYTRGRPKRVQHYRALLRIARNTLDYLQQAAAQLPLAAGPAG
KLWQAQVRHYQPLITQIIAQTERRVLAGEAVPAGEKLVSLFEPHADIIVKGSRDVDYGHK
LNLTTGRSGLILDLVIEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQA
KAWGVRDMAFHKKSGLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLD
HFKTYVWSSVVAYNLALFARLRPT