Protein Info for SMc03102 in Sinorhizobium meliloti 1021

Annotation: carbon monoxide dehydrogenase large subunit transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 781 PF01315: Ald_Xan_dh_C" amino acids 20 to 140 (121 residues), 103.9 bits, see alignment E=9.1e-34 PF02738: MoCoBD_1" amino acids 156 to 405 (250 residues), 268.1 bits, see alignment E=8.4e-84 PF20256: MoCoBD_2" amino acids 431 to 718 (288 residues), 316.5 bits, see alignment E=2.9e-98

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_3045)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92LP4 at UniProt or InterPro

Protein Sequence (781 amino acids)

>SMc03102 carbon monoxide dehydrogenase large subunit transmembrane protein (Sinorhizobium meliloti 1021)
MGVEGIGARVARKEDKRFLTGKGRYTDDMVVPGMKYAVFVRSPHAHATIRSIDATSAKSM
PGVIDVLDGKQLLADGIGNLICGWMIHSKDGSPMRMGAWRPLAHETVRYVGDAVAIVVAD
SVAQARDAAEAVVVDYETLPVVTETLQALGEGEPQIHPEAPGNLIFDWELGDAGAADQAI
AAAAHVTELKIINNRLSPNAMEPRATLGIYDAGDDHFTCYTTSQNPHLARLVMSAFYNVA
PENKLRVIAPDVGGGFGSKIFIYPEEIVCLWASKRTGVPVKWTADRTEAFLTDAHGRDHV
STVKMAFDSSNRITALKVDTIANLGAYMSLFSSCVPTYLYATLLSGQYAIPAIHANVRTV
YTNTAPVDAYRGAGRPEATYLLERTIETAARELGISPAELRRINFIRTFPHQTPVIMNYD
AGDYEASLRGAMEAADWDGFAARKAEAERRGMKRGIGMSCYIEACGLAPSAAVGSLGAGV
GLWESAEVRVNAVGTIEVMTGSHSHGQGHETTFAQVVAERFGVPIDSVNIVHGDTDKVQM
GMGTYGSRSGAVGMSAVFKALDKVEAKAKRIAAHMMEADESDIVIEDGALKVAGTDRSVP
WSQVALASYTAHNLPPGMEPGLKEGAFYDPSNFTFPAGCYICEVEVDPETGRTKIVQFVA
ADDFGNIINPLIVEGQVHGGLAQGIGQALLEGVHYDQSGQLLTASYMDYAMPRADDLPSF
TVTTSNTPCPSNPLGVKGCGEAGAIGSPPALINAITDAIGTNELTMPATPQKVWVAVHSA
H