Protein Info for SMc03092 in Sinorhizobium meliloti 1021

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 PF13412: HTH_24" amino acids 1 to 47 (47 residues), 39.7 bits, see alignment E=4.3e-14 PF13404: HTH_AsnC-type" amino acids 1 to 41 (41 residues), 50.1 bits, see alignment E=2.8e-17 PF01037: AsnC_trans_reg" amino acids 67 to 137 (71 residues), 59.1 bits, see alignment E=4.8e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_3055)

Predicted SEED Role

"Transcriptional regulator, AsnC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92LN5 at UniProt or InterPro

Protein Sequence (144 amino acids)

>SMc03092 transcriptional regulator (Sinorhizobium meliloti 1021)
MDDLDQALISALRQNSRMPVSTLSAMTGVSRATVAARIDRLVANGTIAAFTIRTGAEIPA
SGVRAVVMIEVHGKMADRVAEQLRGLPQVRALHSTNGRWDFIAELEDRDLASFDETLRRI
RLIDGITVTETNILLKTSKLTGSS