Protein Info for SMc03000 in Sinorhizobium meliloti 1021

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 44 to 63 (20 residues), see Phobius details amino acids 67 to 81 (15 residues), see Phobius details amino acids 83 to 110 (28 residues), see Phobius details amino acids 117 to 139 (23 residues), see Phobius details amino acids 158 to 181 (24 residues), see Phobius details amino acids 212 to 230 (19 residues), see Phobius details amino acids 247 to 279 (33 residues), see Phobius details amino acids 290 to 309 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 37 to 305 (269 residues), 145.1 bits, see alignment E=1.2e-46

Best Hits

Swiss-Prot: 37% identical to LSRC_KLEP7: Autoinducer 2 import system permease protein LsrC (lsrC) from Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_0324)

Predicted SEED Role

"Predicted L-rhamnose ABC transporter, transmembrane component 2" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92S09 at UniProt or InterPro

Protein Sequence (326 amino acids)

>SMc03000 ABC transporter permease (Sinorhizobium meliloti 1021)
MMARLLKNREILLVVAIAVLLALIALRFPAFVAPSNLARVYSDTSILVILALGQMAVILT
RCIDLSMAANLALCGMVAAMLNNAFPGLPIPLIIVAVMALGGFLGSINGTLVWKLNIPPI
VVTLGTLTIYRGLIFVLTNGKWINAHEMSDAFKALPRLDVAGMPVLSWLSLVIVALMFLV
MGRTPLGRAFYAVGGNPHAAVYTGIDVGRTRFFAYCLSGALAGLSGYLWVSRYAVAYVDI
AAGFELDIIAACVIGGISIAGGIGSVAGAVLGALFLGVIKNALPVINISPFAQLAISGTV
IIIAVAVNARAERRKGRVILKKAEAV