Protein Info for SMc02897 in Sinorhizobium meliloti 1021

Annotation: cytochrome C transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF00034: Cytochrom_C" amino acids 74 to 173 (100 residues), 32.2 bits, see alignment E=1.1e-11

Best Hits

KEGG orthology group: K08738, cytochrome c (inferred from 100% identity to smk:Sinme_3549)

Predicted SEED Role

"membrane c-type cytochrome cy" in subsystem Terminal cytochrome C oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92SX7 at UniProt or InterPro

Protein Sequence (259 amino acids)

>SMc02897 cytochrome C transmembrane protein (Sinorhizobium meliloti 1021)
MNPYVNMGVGALLGTVFVLMSVSIASEGIFHSEAPEKEGFAIVAEETAGEADAAGGEEAK
SEPIGPMLASADASAGEGVFKKCASCHTVEKGGPNKVGPNLWSVVNRPVASHEGFSYSAG
MQTFAEGGKVVWDYDHLSYFLEAPKKHVPGTAMGFAGIKKVDERANLIAWLREQADSPAP
LPDAGAAGSTEAAPAAGQEGQAPAAAEGAAAPAPAEGGAAPAATEASPAPAEGGATPAPA
EGEAAPAGQIGAPAPAPAN