Protein Info for SMc02706 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 689 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 37 to 56 (20 residues), see Phobius details amino acids 664 to 685 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc02706)

Predicted SEED Role

"FIG003492: Threonine dehydrogenase and related Zn-dependent dehydrogenases" in subsystem Threonine degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92N56 at UniProt or InterPro

Protein Sequence (689 amino acids)

>SMc02706 hypothetical protein (Sinorhizobium meliloti 1021)
MTIDFSPLLAWPYLAALTLVAAVLAALGIWRGVRGAWIRAAALAAFCLALANPVLFQEER
EPLSTIVAVVVDRSQSQENGDRRAQTDQALEGLKERLSRFPQIEARIVEAADGEETEAPS
TRLFGALTTALADVPPARVGGAIFITDGQIHDVPDVNQKLGFDAPVHALISGKPDEFDRR
IEIVSAPRFGIVGEQQRMTFRVVDDGAAPGGSAEVTIRLNGNEIATEQAEPGTDVPFTFT
VPRGGNNILEFAVNPVAGEVTETNNRAVHVLDGIRENLRVLLVSGEPHAGERAWRNLLKS
DAAVDLVHFTILRPPEKQDGTPINELSLIAFPTRELFVDKISEFDLIIFDRYQHRGVLPI
LYYDNIAQYVQNGGALLIAAGPEHAGDDSIAATPLAAVLPATPTGVMNEKAFFPRLSEEG
KKHPVTRGLEGAADEPPAWGRWFRTVDVDRPLGQTVMEAADGKPLLVLNRVGKGRVAMLL
SDQGWLWARGFEGGGPHVSLYRRTAHWLMQEPALEEEALTARAMGRTLEITRQTIEGDPG
QATLTYPSGRTQEVTLTEGEPGLYKAEVETNEIGLFEVANDELTTLVHVGNVDAPEFKAA
ISTEEKIEPWAEKTKGLVRRLASADGPVDLPSILPVRGAVRVADDQRLSLRMTDETVLKG
IDSLSLFAGLFGLAALLFLISATWYREGR