Protein Info for SMc02478 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 PF03969: AFG1_ATPase" amino acids 11 to 375 (365 residues), 373.4 bits, see alignment E=5.8e-116

Best Hits

KEGG orthology group: K06916, (no description) (inferred from 100% identity to smk:Sinme_3110)

Predicted SEED Role

"ATPase component BioM of energizing module of biotin ECF transporter" in subsystem Biotin biosynthesis or ECF class transporters

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92LJ4 at UniProt or InterPro

Protein Sequence (384 amino acids)

>SMc02478 hypothetical protein (Sinorhizobium meliloti 1021)
MLNPDDSILHKLEALVAAGERQRDPAQFAIARRLDSLTANLLASRPSRKTNALGWLFAAR
KKDQPPVKGLYIHGGVGRGKTMLMDMFFDAVPIQRKRRAHFHEFMADVHERIYRHRQKLK
NGETKQADPIPPVASDLFGEARLLCFDEFTVTDIADAMILARLFGELFAKGCVLVATSNV
EPDNLYRDGLNRGLFLPFIDLLKANAEIISLDTETDYRLGKTDGAPVWLSPLGPETEAAM
DRAWYRETSGAPAASAEIGRKGRTIRVPAAAGRAARFTFADLCAQPLGAADYLAIVAQYS
TIFLDHVPHLGPHLRNETKRFIILVDALYDQGARLFASAAAEPQHLLTARKGTEGFEFDR
TVSRLIEMQSQEYAAAHPQNSAAE