Protein Info for SMc02400 in Sinorhizobium meliloti 1021
Annotation: outer membrane protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 71% identical to Y4FJ_SINFN: Putative outer membrane protein y4fJ (NGR_a03720) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)
KEGG orthology group: None (inferred from 100% identity to smk:Sinme_0850)Predicted SEED Role
"ATP/GTP-binding site motif A (P-loop) :Porin, alpha proteobacteria type"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q92R58 at UniProt or InterPro
Protein Sequence (349 amino acids)
>SMc02400 outer membrane protein (Sinorhizobium meliloti 1021) MNIKSLLLGSAAAMAAVSGAHAADAIVAAEPEPMEYVRVCDAFGMGYFYIPGTETCLKIG GYIRVQGDFGRDNVNHLTSFDDDGTSDWDMFSRAYISFDAKSDTEYGTLTGFFASEFNSD TDSASDGGGDSHIDVDEAYIELGGFRAGFFYSWWDKGLNGETDSIGENTEFNSVRYTYDG GTFQVGVAVDELEGTSTKPNGVGVEGIVSASLGGVTFDLLGSYDTEWEEGAIRALLSADA GPGTFQVAGIWASGSNAYWHDSEWAVAASYRFNVSDKLAITPGAQYWGGLNESDKLGGRF DNDADQWRVGLTADYDITEGLATRFAINYTDPSNAPDSVSGFLRLQRDF