Protein Info for SMc02300 in Sinorhizobium meliloti 1021

Annotation: transposase number 4 for insertion sequence ISRM30

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 694 PF00239: Resolvase" amino acids 18 to 169 (152 residues), 65 bits, see alignment E=1.3e-21 PF07508: Recombinase" amino acids 196 to 313 (118 residues), 57.1 bits, see alignment E=2.7e-19 PF13408: Zn_ribbon_recom" amino acids 332 to 391 (60 residues), 39.9 bits, see alignment 6.9e-14

Best Hits

Swiss-Prot: 86% identical to Y4BA_SINFN: Uncharacterized protein y4bA/y4pH (NGR_a00280) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: None (inferred from 100% identity to sme:SMa0785)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q925Y8 at UniProt or InterPro

Protein Sequence (694 amino acids)

>SMc02300 transposase number 4 for insertion sequence ISRM30 (Sinorhizobium meliloti 1021)
MSTDNAMKISADHLRRDAFLYVRQSSLRQVFENTESTKRQYALRDRAVALGWPIERVHVI
DNDLGLSGAQSQDRDGFQRLVTEVAMGHAGIVLGLEVSRLARNNADWHRLLELAAMSRTL
IMDEDGVYDAASFNDRMLLGLKGTMSEAELHILKSRLQGGILNKARRGELELPLPIGLVY
TPDMRVVLDPDRQIQDTVRMLFDTFREVGSACAVVRRLRSEKILFPRRIRRGIGKGDVLW
SEIDHSRVIQILHNPRYAGAFAYGRTRTIYNAKLKSVQQKMPRSDWQVLIPQAHEGYISW
DEFERNQTSLEQNAVGFSPGLRGRMPRQGNGLLQGRVLCGRCGARMRVHYEQFEGNLRPY
YICNEAVVRHAGKACQWARGPAIDEAVSALLLEAMAPTAIEVALAVQEEISQRVEQAASL
RDKQLQRARYEAELARRRYLKVDPDNRLVADALEADWNGKLRDLDTLQREHERRNETDQS
LLDGAMQERIRALAADFPGIWNNERTSPVERKRMLGLLIEDVTLLVDEQINMHIRWRGGR
TQSLAVARPRPMAVIRKTPEAVVALINELLETDNDQQIASRLNALGHRNWRGEAFTLKKV
MLVRRAYGLKTRFERLRESGMLTGEEVARRFGVSATTVHQLGRDGVLKRHRYATNHRYLY
EPPGNVRLAKGVGGRYGSRKPRLIDAQPIQQGAS