Protein Info for SMc02230 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 960 transmembrane" amino acids 796 to 816 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc02230)

Predicted SEED Role

"TPR repeat, SEL1 subfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92KP5 at UniProt or InterPro

Protein Sequence (960 amino acids)

>SMc02230 hypothetical protein (Sinorhizobium meliloti 1021)
MNGSRSTSQRMGSPSYGDRPSLDALNRTIEGLEARIEGLMSSVSRETRQPERPRPAPSEA
VSEIIDRQRALNAARERSPLRERAAPSESDRLAPTRLAAEARYQPPQAAAAPSGRSSAAA
DIAEALVGLRHELKRDLDDGLSREMHALRSEIRGIKAEAAQDRRFAEDVRHDIERLSAGI
KELGRQASPAEADALRIEFDDLRSMLEGLAREDSMRRMENRWTGVEDRLNAFDQNRDDEL
VALAYRLDEIKAQINSLDRGAGVEVLESKLVAVAQAIEMLGRQIQPDERRLAPQFADLDK
RLDEISRAIAAGSRNVAGTDGSFVDRLENRLGDLSRQIDTLSNPVDSGLGARIEALAARV
EDLAGEKAAARLEERLDQLSAVLEHNRPGAEPDLTDRLADISRKIEALSGDSITDALAER
LDDLARRIDGLAGNVEPSADTRFDRLEDRLAGIAQRLEETHAAPFDDRQALRNLEAQIGN
LSTLISQSHGETAGVPAEFESRMNTLEDYLATSDEYIIEAARQAAEAVMEAYSRNTAPQM
AASTDMAAISALAEDLRTLEELSRSSDERTARTFEALHETLVHIAEKLERLEEREPPASH
APMPKAAPLEAAGTLTKAERDEDVERAAHALAAESETSIHAPVAAAAEANDAAEVAMVED
GEIKVEARAAKTGLLAGLTRRFAPKQNEGMPIQARQMVEPAPSIDPSEMLAPEDANQLLE
PGSGVPDVKKILERVRAGQIARGAQEANEGEKADFIAAARRAAQLAVEESDTLNRVKESK
APSAVGGALARHRRPILIAVGAVLLAIMSYPLVSTVLKGKEAPSAPPVAAIERRAEVAEP
KAAVDRVVQTAATAKIGEEPRAPAGAEKTDAPAIAAKQPPTQPAAAEAGKIDEAIGGAGD
GQAALMRPAEAQTPGPISTLQPSSESSAAEPAKMSEIVLPEGFGPPALVTAAKGGDPLAF