Protein Info for SMc02090 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF17930: LpxI_N" amino acids 14 to 145 (132 residues), 99.1 bits, see alignment E=2e-32 PF06230: LpxI_C" amino acids 149 to 284 (136 residues), 149.2 bits, see alignment E=6.1e-48

Best Hits

KEGG orthology group: K09949, hypothetical protein (inferred from 99% identity to smk:Sinme_1309)

Predicted SEED Role

"UDP-2,3-diacylglucosamine pyrophosphatase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92Q44 at UniProt or InterPro

Protein Sequence (295 amino acids)

>SMc02090 hypothetical protein (Sinorhizobium meliloti 1021)
MAVAIHRLPQSKGRLAIIAGAGTLPHHVAEAARLQGEDPFIIALSREADTDWTGFDHAVC
AIGDFAAISRTFETEGIDRVVLSGAVRRRPEWRDIRPTLKTLAKVPRVFRTLISGGDDAV
LRMVIELIEASGAHVIGAHEVVPGLLADTGRLGAHAPTDEDRRDIEAGIAAANALGALDV
GQGAVAVGGRVVALEGAEGTDAMLARVADLRKDGRISIRRRGVLVKLCKPQQDERADLPS
IGPSTVAGAHAAGLAGIAVEAGRALVLERARLVEEADRSGLFILGIERDGRRDRR