Protein Info for SMc02017 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 transmembrane" amino acids 46 to 65 (20 residues), see Phobius details amino acids 77 to 99 (23 residues), see Phobius details amino acids 135 to 159 (25 residues), see Phobius details amino acids 170 to 191 (22 residues), see Phobius details amino acids 229 to 250 (22 residues), see Phobius details PF04116: FA_hydroxylase" amino acids 179 to 309 (131 residues), 74.2 bits, see alignment E=7.1e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc02017)

Predicted SEED Role

"possible desaturase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92MT1 at UniProt or InterPro

Protein Sequence (332 amino acids)

>SMc02017 hypothetical protein (Sinorhizobium meliloti 1021)
MSDAVQPEKPNTGGWAPPKPVETPPVFVWPPKPMELFKWLFGKEGYLLPLNIPIMLISTF
IWWYFIPDLERMKTFEFGWIAQVYAVNLVSLVVWTTIWHARFYVQRAQDTEYKYNRRWPK
DTETFMFGSQLLDNMFWTLVSGVTIWTAYLVVTLWAMANGWLPYLDMAEHPFYFALFMFL
IALFREFHFYSVHRLLHFGPLYKWVHSIHHKNSNPIPWSGMAMHPVEHLFYMSGVLIHWI
IPSNPLLVVYHLQHLAFMPAPDHSGFAKLVVNGKAQMDVATYMHYLHHRYFEVNYGGDGS
VPLDRLFGTWHNGSAEAHERMNRRFKEKKLQR