Protein Info for SMc01805 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 143 transmembrane" amino acids 68 to 89 (22 residues), see Phobius details TIGR00369: uncharacterized domain 1" amino acids 32 to 139 (108 residues), 36.8 bits, see alignment E=1.9e-13 PF03061: 4HBT" amino acids 54 to 123 (70 residues), 49.5 bits, see alignment E=4.5e-17 PF13622: 4HBT_3" amino acids 85 to 138 (54 residues), 29.8 bits, see alignment E=5.7e-11

Best Hits

KEGG orthology group: None (inferred from 99% identity to smk:Sinme_1042)

Predicted SEED Role

"Phenylacetic acid degradation-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92QR3 at UniProt or InterPro

Protein Sequence (143 amino acids)

>SMc01805 hypothetical protein (Sinorhizobium meliloti 1021)
MTLQPVMNVDELNRFLDTDFPQVHTDGKVFSVTETGPGFATMRLDPNERHIRPGGTVSGP
TLFALADVSAYIALIAHIGPVALAVTTSLNINFLRKPEPEPLECTCRILKLGKRLAVLDA
SIKPVASPDLVAHATATYSIPPR