Protein Info for SMc01779 in Sinorhizobium meliloti 1021

Annotation: transport transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 59 to 77 (19 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 109 to 126 (18 residues), see Phobius details amino acids 146 to 168 (23 residues), see Phobius details amino acids 174 to 197 (24 residues), see Phobius details amino acids 228 to 253 (26 residues), see Phobius details amino acids 266 to 285 (20 residues), see Phobius details amino acids 292 to 314 (23 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 352 to 371 (20 residues), see Phobius details amino acids 380 to 400 (21 residues), see Phobius details PF07690: MFS_1" amino acids 48 to 359 (312 residues), 77.7 bits, see alignment E=8.5e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc01779)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92QT8 at UniProt or InterPro

Protein Sequence (408 amino acids)

>SMc01779 transport transmembrane protein (Sinorhizobium meliloti 1021)
MAAEPAEMGTVLREARRNVQLLTVAQALLGVVGPISFAVGGVAGHQLLGEDKSLATAPLT
AYNLGMALGVVLVAVLSRLVGRRFAFIAGASIAALGGVLATAALFRESFWFFACGLAVLG
ASNGFTQKLRFAAADASPSFYKAKAISWILGGGIVSAILGPQIVIFAGDYFAPVWFAGAF
VALVPVCIVALFFFVLLRLPDHTTASAHHEQPPARPLREIAGSQRFMTGMICGISSYVLM
TFMMTGAPVAMVVGCGFSSDLATLGIQWHVLAMFAPSFVTGWLISRFGAERIVACGLLLL
MACAAVAHLGVALWNFWGALSLLGLGWNFGFIGSTAIVAQSYRPHEADKVQGFHDIVLFS
AVACSSFASGKVLSGYGWDMLSAAVWPVAGFCLLLLLPLMRAGKQATA