Protein Info for SMc01718 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 transmembrane" amino acids 33 to 52 (20 residues), see Phobius details amino acids 76 to 99 (24 residues), see Phobius details amino acids 108 to 134 (27 residues), see Phobius details amino acids 161 to 184 (24 residues), see Phobius details amino acids 193 to 211 (19 residues), see Phobius details amino acids 239 to 259 (21 residues), see Phobius details PF09335: SNARE_assoc" amino acids 99 to 213 (115 residues), 76.4 bits, see alignment E=1.4e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc01718)

Predicted SEED Role

"COG0398: uncharacterized membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92KR0 at UniProt or InterPro

Protein Sequence (266 amino acids)

>SMc01718 hypothetical protein (Sinorhizobium meliloti 1021)
MSHGISNGAEEGPALESSSSRRDLRPVPHRSPWRFLPISLLLAGGVLGYAYGLQDYVSLS
ALADQRETLAAHVAAHPVSSALVFFAIYVAVVVFSIPAASVLTISAGFLFGCLAGAAITV
LAATLGACLLFIAARGAFSDILRRRAGGVLERLADGFRDNAFLYLLILRLAPIFPFFLIN
IAPAFFEVKLRTYALATLIGIIPGTLAYTWLGRGLGDVIALAAASGREFTVADFATRDIS
LALVALASIAALPLAFRVIQSRRKGA