Protein Info for SMc01708 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1291 PF05658: YadA_head" amino acids 1 to 21 (21 residues), 11.5 bits, see alignment (E = 5e-05) amino acids 23 to 47 (25 residues), 12.9 bits, see alignment (E = 1.8e-05) amino acids 97 to 118 (22 residues), 25.4 bits, see alignment (E = 2.1e-09) amino acids 135 to 160 (26 residues), 15.6 bits, see alignment (E = 2.4e-06) amino acids 163 to 188 (26 residues), 17.7 bits, see alignment (E = 5.6e-07) amino acids 205 to 228 (24 residues), 24.6 bits, see alignment (E = 3.7e-09) amino acids 233 to 255 (23 residues), 15.5 bits, see alignment (E = 2.8e-06) amino acids 243 to 266 (24 residues), 18.5 bits, see alignment (E = 3.1e-07) amino acids 296 to 320 (25 residues), 25.9 bits, see alignment (E = 1.5e-09) amino acids 336 to 358 (23 residues), 23.1 bits, see alignment (E = 1.1e-08) amino acids 349 to 372 (24 residues), 13.6 bits, see alignment (E = 1e-05) amino acids 456 to 478 (23 residues), 16.5 bits, see alignment (E = 1.3e-06) PF05662: YadA_stalk" amino acids 626 to 663 (38 residues), 38 bits, see alignment (E = 2.7e-13) amino acids 753 to 782 (30 residues), 42.7 bits, see alignment (E = 9.2e-15) amino acids 820 to 858 (39 residues), 37.8 bits, see alignment (E = 3e-13) amino acids 1003 to 1045 (43 residues), 36.4 bits, see alignment (E = 8.6e-13) amino acids 1056 to 1088 (33 residues), 45.8 bits, see alignment (E = 9.8e-16) amino acids 1140 to 1176 (37 residues), 37.2 bits, see alignment (E = 4.8e-13) PF03895: YadA_anchor" amino acids 1233 to 1289 (57 residues), 47.6 bits, see alignment (E = 2.2e-16)

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc01708)

Predicted SEED Role

"Autotransporter adhesin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92KQ7 at UniProt or InterPro

Protein Sequence (1291 amino acids)

>SMc01708 hypothetical protein (Sinorhizobium meliloti 1021)
MALGRQSVSAGSGSLAFGNGSYANSNGSVAIGQSAYAANVRAIAIGGDDAFAWREAEQTK
AGGSQSIAMGVRARTKSLVVDDPDTVANEADPGGASDAIAIGTDAQANGDRSLAIGRQNQ
AGNEQSIGIGAGNTATGKLSIGIGSSNVASGEQSLSLGAGNNALGQGSISIGTETTAGGL
RSIAFGVRASTKEANLDIPDDVAAIDAIAIGTNTKANGDRSVSIGTGSQASSGAVSIGDA
AKAVGDKSVSIGTESWADGDESVSIGLVNNAGFEGNDRIKGGQTSVSLGAFNQSPGIEAI
AIGARNEANADRSIAIGSRAKTKAADPAQADGGARDAVAIGTDALANDDRSISIGWNSST
SLNDSISIGTRATSGSAGDIMIGTGSGTGSTSGQNNVALGVAASQKVKGSSNIAIGDSAG
GSREGDNNVAIGTNAGIQFSESEHETAVRADLVVSDAVSIGNEALASADEAIAIGTGAVA
SGLKSISIGVGNTVSGASSGAIGDPTDITGTGSYSLGNDNTIAADNAGTFGNDNTLADAA
DGSRVIGNGNNIDVSDAFVLGNGADVTEVGGVALGSGSVSDTGADVAGYVPGGASTADQN
AIEATQSTRGAVAVGNPDAETGVYRQITGVAAGTADSDAANVAQLKSVETIAKTGWKLTT
DSGSIDGIGPGDELVLKGGDGNIVISNQILSNDVSIDLADEIEVNRVTARDPDTGASTVL
DENGLSFTTQDANGEDTALGPRVTAAGIQAAGKITNVAAGEADTDAVNFSQLRQVETASG
NTDQRAVKYDWTDANTNGVIDEGELNLDSVTLAGGMGGTRISNLAPGALSAASTDAVNGS
QLFGLRSRVSNVAVALGGGAAYDPVKDEWIAPKYTIGGTDYSNVGDALAAVGGTAGAGWS
LSAQGANASNVAPGETVDLRSGDGNIVVSKAETGDTVSFDLADDLDVSESITVGADPADP
NAPTTVITGGSIVIGSTMLGSNGLVITGGPSVTTDGIDAGGMKVTNVANGTVAKDSKDAV
NGGQLFDVVANATANGVGYDDKSKGTLTLEGANGTKITNVAAGDLNANSTDAVNGSQLYA
TNVKVDRLDTEVKEIDSRVTYIESFQGDLENAAVYDTDAAGKRLNTLTLEGGDPDKPVLI
ANVAKGVKATDAVNVGQLDESVAESKSYTDEKTEWAIDQAAIYTDQVIETKVSAVNNYAQ
QRFAQLSGEIGQVRSEARQAAAIGLAAASLRFDNEPGKLSVALGGGFWRSEGALAFGAGY
TSEDGRVRANLTGAAAGGNVGVGAGLSITLN