Protein Info for SMc01643 in Sinorhizobium meliloti 1021

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 transmembrane" amino acids 55 to 79 (25 residues), see Phobius details amino acids 153 to 175 (23 residues), see Phobius details amino acids 186 to 211 (26 residues), see Phobius details amino acids 231 to 250 (20 residues), see Phobius details amino acids 292 to 316 (25 residues), see Phobius details amino acids 335 to 361 (27 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 58 to 130 (73 residues), 38.3 bits, see alignment E=1.4e-13 PF00528: BPD_transp_1" amino acids 168 to 366 (199 residues), 101.1 bits, see alignment E=6.7e-33

Best Hits

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 100% identity to smk:Sinme_2235)

Predicted SEED Role

"Nucleoside ABC transporter, permease protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92NF0 at UniProt or InterPro

Protein Sequence (369 amino acids)

>SMc01643 ABC transporter permease (Sinorhizobium meliloti 1021)
MMESGPITGPVVTDATAGETALRSPDLSGVPAKPNPAADELGGTFWRRFAFRRPLAALIL
QRLGLSVGLLFAVSLMIFGGIEALPGDFATTYLGQSATPQAVENIREDLGLDRPWSERYL
SWLGGAVQGDFGTSWASRNSVSEQIGNRLGNSLFLAFFAALISVPLAVGLGMLAVQFRNR
LPDKIINVISLAAISLPEFFIGYLLIMFFAVKWGVATFPATVYDSMGFTERLSAIALPVA
TLVLVVLAHMMRMTRAAILNVMSSAYVETAELKGLGTFRIIARHAAPNAVAPVINVIALN
LAYLVVGVVVVEVVFVYPGMGQYMVDAVTVRDMPVVQACGLIFAAFYIFLNMAADILAIL
ANPRLRHPR