Protein Info for SMc01551 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 522 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 32 to 62 (31 residues), see Phobius details amino acids 116 to 137 (22 residues), see Phobius details amino acids 161 to 184 (24 residues), see Phobius details amino acids 196 to 217 (22 residues), see Phobius details amino acids 229 to 256 (28 residues), see Phobius details amino acids 262 to 277 (16 residues), see Phobius details amino acids 307 to 329 (23 residues), see Phobius details amino acids 349 to 373 (25 residues), see Phobius details amino acids 393 to 414 (22 residues), see Phobius details amino acids 446 to 465 (20 residues), see Phobius details amino acids 494 to 512 (19 residues), see Phobius details PF03062: MBOAT" amino acids 150 to 379 (230 residues), 54 bits, see alignment E=8.6e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc01551)

Predicted SEED Role

"STRUCTURAL ELEMENTS; Cell Exterior; surface polysaccharides/antigens"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92NB0 at UniProt or InterPro

Protein Sequence (522 amino acids)

>SMc01551 hypothetical protein (Sinorhizobium meliloti 1021)
MIFIDPLFLFLFLPVTLIAFYLALLTRGRNEALLVIFTASIIFYAPYGISSVFLLLVALL
VNFGVSNALLATDDSNPYRRVLYGCGQGYNIASLCYFKYKIVTVLLGENSDFLTDIAGVA
IPAGISFYTFHQAAFLADAYVREKSVVEFFEGTRSLRSGFWAFCRYGAFVSFFPQLIIGP
ITYLHEFHPQVKSRKFISFDPLDIAVGLAFISIGMFKKVVIADNIAPTVDLVFGAAGAGA
VMDPAHAWIGALSYMAQLYFDFSGYSDMALGLARMFGLRYPLNFYSPFKANGILDYYRRW
NMTLTRVIARFLFTPLSIAGTRYCAVHRLSPLPTQILGLWLPMLINFQVLSLWHGAAWTF
VAFGLMQGVWSAAEAQIRGSKKYKRMCKVTSPFIRLLVERVIFFMLICFSLAMFRSESVG
AAFHLYAQMFGASLDAPSAFEMREPVLMLFCAFSIIYLMPNAVELMRRYRPAMMTYENES
YGFAFLRNIWRPSWGWAAFAAILTISSLHYVSRQPPFLYQGF