Protein Info for SMc01511 in Sinorhizobium meliloti 1021

Annotation: hemin transport system permease transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 366 signal peptide" amino acids 25 to 28 (4 residues), see Phobius details amino acids 47 to 50 (4 residues), see Phobius details transmembrane" amino acids 29 to 46 (18 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 115 to 136 (22 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 178 to 202 (25 residues), see Phobius details amino acids 222 to 244 (23 residues), see Phobius details amino acids 270 to 297 (28 residues), see Phobius details amino acids 310 to 330 (21 residues), see Phobius details amino acids 339 to 358 (20 residues), see Phobius details PF01032: FecCD" amino acids 38 to 359 (322 residues), 320 bits, see alignment E=7.4e-100

Best Hits

KEGG orthology group: K02015, iron complex transport system permease protein (inferred from 100% identity to smk:Sinme_2477)

Predicted SEED Role

"Hemin ABC transporter, permease protein" in subsystem Hemin transport system or Iron acquisition in Vibrio or Putative hemin transporter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92N14 at UniProt or InterPro

Protein Sequence (366 amino acids)

>SMc01511 hemin transport system permease transmembrane protein (Sinorhizobium meliloti 1021)
MEGAMRRPALAARIVRDWRSGDRAGLARCLIAVLAVLAAATFMTSITTGAADASLSSIFR
WLSGETDQAMSARDRIIILDIRLPRAVLGMLVGASLAVSGVVMQGLFRNPLADPGLVGVS
SGASLGAVLLIVLGDVAFGPLFAVFGFYALPFGAFLGGLATTLLLYRIATRGGQTSVATM
LLAGIALGALAGAVTGVLVFIADDKQLRDLTFWGLGSLAGANWTKIAAAGPIILVSLAVV
PFLARGLNAITLGEAAAYHMGVPVQRLKNIAVFSVAGATGASVAVSGGIGFVGIVVPHLL
RLVIGPDHRYLLPASALLGGTLLIFADMLARTIVSPAELPIGIITAFVGAPFFLWVLLRG
RSNMGL