Protein Info for SMc01415 in Sinorhizobium meliloti 1021

Annotation: transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 45 to 66 (22 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details amino acids 134 to 152 (19 residues), see Phobius details amino acids 164 to 182 (19 residues), see Phobius details amino acids 193 to 215 (23 residues), see Phobius details amino acids 223 to 243 (21 residues), see Phobius details amino acids 249 to 271 (23 residues), see Phobius details amino acids 278 to 302 (25 residues), see Phobius details amino acids 337 to 359 (23 residues), see Phobius details TIGR03082: membrane protein AbrB duplication" amino acids 26 to 181 (156 residues), 126.1 bits, see alignment E=5.6e-41 amino acids 203 to 357 (155 residues), 146.1 bits, see alignment E=3.9e-47 PF05145: AbrB" amino acids 49 to 358 (310 residues), 295.4 bits, see alignment E=2.2e-92

Best Hits

KEGG orthology group: K07120, (no description) (inferred from 100% identity to sme:SMc01415)

Predicted SEED Role

"Putative ammonia monooxygenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92NS9 at UniProt or InterPro

Protein Sequence (362 amino acids)

>SMc01415 transmembrane protein (Sinorhizobium meliloti 1021)
MKPEQPSTPMLPKNGGLGRLSAVWQWCLLALLSAVFAGVLEMIGIPAGLLMGPMIAGALV
GMNGGTIRLPRQLFFCVQVVLAMMIAASMSPDLLVTFSGNWLLFLAIILSVIGVSTLCGW
TITRMGILPGTTAIWGSSAGAASTMLLMADAYGADARLVAFMQYLRVVFVASTATIVSHL
WVSGVEAETATHWFAPIAGLPFFMTLAVGIASGILGKILRVPAGAFLVPFAIGSALNITG
TLTIELPQWLLALSFAMLGWNIGLGFTRAILAHARRALMPTIVSIVVLISFSGLLALLLI
KVAGIDPLTAYLATSPGGLDSIAVIAASSNVDLPFVMALQTARLLIITLIGPALARFVAD
RA