Protein Info for SMc01412 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 transmembrane" amino acids 69 to 87 (19 residues), see Phobius details amino acids 93 to 108 (16 residues), see Phobius details PF07812: TfuA" amino acids 55 to 180 (126 residues), 128.3 bits, see alignment E=6.6e-42

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc01412)

Predicted SEED Role

"FIG00986938: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92NT1 at UniProt or InterPro

Protein Sequence (260 amino acids)

>SMc01412 hypothetical protein (Sinorhizobium meliloti 1021)
MAGRGDNPILVFLGPTVRLSEAEKVLDAIYLQPAAQGDVLLAAHAFRPRAMILIDGQFED
RPAVRHKEILWAMAQGIVFIGAGSMGALRAAELDAFGMIGVGLIYRWYRRFGRGPLSSPA
PDDAVAVHSGPPELGFLPLTDALVDLQRTFSAWSRLGAVSPSERDRLTTLARDMNFRERS
LSAVLQAAGWAQERSRELRQQMIGQKRHDAILALQQAPTLLAQHSGTQQDGGWIATNTFL
RDLEAGGIDSNLVNTYKLKP