Protein Info for SMc01089 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 128 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 54 to 77 (24 residues), see Phobius details amino acids 89 to 112 (24 residues), see Phobius details PF05656: DUF805" amino acids 14 to 119 (106 residues), 70.1 bits, see alignment E=1.1e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMc01089)

Predicted SEED Role

"protein of unknown function DUF805"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92KR2 at UniProt or InterPro

Protein Sequence (128 amino acids)

>SMc01089 hypothetical protein (Sinorhizobium meliloti 1021)
MAKEGRQPSMMWLFFSPSGRIGRLPFLLAWLFWFAVGSIFLVQMMKNEVDDAALALWTLA
LIVSGVLSTLSIAMLAIKRLHDIGYPGPLALCLFIPVLSPIVFIGLCLWPGANRANEYGS
RRDAPAGD