Protein Info for SMc00928 in Sinorhizobium meliloti 1021

Annotation: signal peptide protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF07486: Hydrolase_2" amino acids 267 to 377 (111 residues), 96.9 bits, see alignment E=5.8e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_0540)

Predicted SEED Role

"Mlr7408 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92KL0 at UniProt or InterPro

Protein Sequence (385 amino acids)

>SMc00928 signal peptide protein (Sinorhizobium meliloti 1021)
MRDKFRFSFSAWRGPAILGLAVFLGFPSAVAYSDIATFLSGINRGGERWRTYLTPSPAGS
LHEVEMVFTDPITTGALDGGAGMTLPDGGRVALTAESKHQGTPDEDRVTRKLKKGRIVAV
TPVTPPKDFSAGSILQRTSSLIGPALDGPEKMVFAKPKIKGKEIEIATAFYRKTPPKPEP
GLSPMLAKLVTNDKPDILATAYVRPEPDYARESPFDSILRNDENAGRFIPDIAPDDHAWA
ATPLPPTVFSKEEQTCLAEGIYFEARSESVKGQAAVAQVILNRVRNPTYPKTICGVVYQN
KAWRNRCQFSFACDMIRDLIYSRSHWKTAKEVALAVTAGRIWLPEVGSATHYHATYVNPA
WAKTMKRVGKIGLHIFYRTYGGGWS