Protein Info for SMc00761 in Sinorhizobium meliloti 1021

Annotation: oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 transmembrane" amino acids 406 to 424 (19 residues), see Phobius details PF07992: Pyr_redox_2" amino acids 32 to 64 (33 residues), 26.4 bits, see alignment (E = 9.1e-10) PF01266: DAO" amino acids 34 to 385 (352 residues), 215.9 bits, see alignment E=2.4e-67 PF00070: Pyr_redox" amino acids 35 to 62 (28 residues), 25.5 bits, see alignment (E = 3.1e-09)

Best Hits

Swiss-Prot: 100% identical to ORDL_RHIME: Probable oxidoreductase OrdL (ordL) from Rhizobium meliloti (strain 1021)

KEGG orthology group: K09471, gamma-glutamylputrescine oxidase [EC: 1.4.3.-] (inferred from 100% identity to smk:Sinme_0398)

Predicted SEED Role

"Oxidoreductase"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.4.3.-

Use Curated BLAST to search for 1.4.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q9Z3S3 at UniProt or InterPro

Protein Sequence (428 amino acids)

>SMc00761 oxidoreductase (Sinorhizobium meliloti 1021)
MTWQSPISPGYSWYEATIPERPVFPIMPGSRKADVAIIGGGYTGLQAACNLARSGTDVTL
IDACRFGDGASGRNGGQFGTGQRVWADETEEVLGREWAQRLFDMAENAKRYVLGFAEEHA
IDIEFMPGQLSVGHKASLERDYRNHVEAMTGRYGYPHLSFMDREETVSRLGSSHYHFGIR
DTGTGHIHPMKLVVGLARQAALAGANLYEGTKALKIEKKGGAVVIETTSGTITADRALIA
CNGYIGNLEPVTASHVMPIRSFIGATTVLHGHPEILPGGESVDDSRFVVRYFRKSKDGRL
LFGGREAYTADNPRDISAHIRRQICEIYPDLADVEITHAWGGSVGITMPRQPFCREVMPG
VTTIGGYSGHGVMLANYCGKLYAELALGKSTELDLLKQLKIPAFPGGTRFRSALLFLALS
WYALRDRF