Protein Info for SMc00470 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details PF04347: FliO" amino acids 44 to 108 (65 residues), 22.8 bits, see alignment E=4e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_1708)

Predicted SEED Role

"procollagen, type VI, alpha 3"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92KA1 at UniProt or InterPro

Protein Sequence (321 amino acids)

>SMc00470 hypothetical protein (Sinorhizobium meliloti 1021)
MMETILGDNASRFMIAAGAVAIGLLCLVAVLRLMRNKPSSPFVRGGKNRQPRLAVLDAAA
VDTRRRLVLVRRDDVEHLIMIGGPTDIVIESRIAPEGESPVPATLQAEPEEKTTRAPIAE
VRPPPVPSPVPPEPPLPTEAAAEPVRQPARPSEPPRVAARPEPPVRVVPDQQQAPALGSS
QPQQVSRPLPAPHIPPVSAIEPSHTDFGAVRDRPLPVEPAARDERPVPLTAIEPVKGMPG
QSLPPRPAAPEAAAEFERMLDAEISGDLQRFTPSGPPRPEIRPAGRQEPVLGSPSQDTRK
EPTIEEEMERMLADISVSRKL