Protein Info for SMc00466 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 359 transmembrane" amino acids 76 to 97 (22 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 274 to 294 (21 residues), see Phobius details amino acids 309 to 327 (19 residues), see Phobius details TIGR01620: TIGR01620 family protein" amino acids 67 to 349 (283 residues), 323 bits, see alignment E=8.4e-101 PF05128: DUF697" amino acids 194 to 348 (155 residues), 173.5 bits, see alignment E=1.5e-55

Best Hits

Swiss-Prot: 100% identical to Y1807_RHIME: UPF0283 membrane protein R01807 (R01807) from Rhizobium meliloti (strain 1021)

KEGG orthology group: K08990, putative membrane protein (inferred from 100% identity to smk:Sinme_1712)

Predicted SEED Role

"GTP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92PF5 at UniProt or InterPro

Protein Sequence (359 amino acids)

>SMc00466 hypothetical protein (Sinorhizobium meliloti 1021)
MSDDFNDRRRRPAAFSVEAEEAIEREMEQTPRRAPGSFSEKVVMTPDAEDPFIGTTAAVE
SLNLPEAMPRRRRLSFGKIAAGAFGILISLAVGLWIDRLVRDLFSRADWLGYGAVAVVAI
GVIAFLIVVAREVFGMMQLTAVQTLKADLAAAAASGKTQAARAATARLVHLLAGNPRTAK
GRARLAETEGDIIDAPHLIELTERELLAPLDREARRIILGAAKRVSIVTAVSPRALVDLG
YVIYESARMIRAMAELYGGRPGTLGLLRLMRDVIAHLAVTGSIAVGDSLIQQILGHGLAS
KLSARLGEGVINGLMTARIGIAAMDLCRPMPFRALKRPSIGDFLGDLAPGTARSEGSAG