Protein Info for SMc00353 in Sinorhizobium meliloti 1021
Annotation: transmembrane protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 100% identical to EXOD_RHIME: Protein ExoD (exoD) from Rhizobium meliloti (strain 1021)
KEGG orthology group: None (inferred from 100% identity to smk:Sinme_3603)Predicted SEED Role
"exopolysaccharide synthesis protein ExoD-related protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q52923 at UniProt or InterPro
Protein Sequence (240 amino acids)
>SMc00353 transmembrane protein (Sinorhizobium meliloti 1021) MVCQARFGVKNASRGHRMERPQTVKGKIMAVEFGDSQRSLSDTLTGMIASIRGNTITLRE LMIEIGEQGFLLLCALLTLPFLIPVSIPGVSTVFGAAIILISLAITLNRMPWLPKRILDR EIATEKLVPTLRKGAALVSKLDRYVRPRLNFLTEGALMNRFNGLMIMAGGVLLMFPLGLI PLSNTLPGIAILLLSLGIIQRDGLMVAGGYFFLVATTVYFAVLGYAAFAAGQGLSHFFVS