Protein Info for SMc00266 in Sinorhizobium meliloti 1021

Annotation: transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 622 transmembrane" amino acids 32 to 53 (22 residues), see Phobius details amino acids 64 to 82 (19 residues), see Phobius details amino acids 106 to 127 (22 residues), see Phobius details amino acids 145 to 165 (21 residues), see Phobius details amino acids 174 to 192 (19 residues), see Phobius details amino acids 203 to 234 (32 residues), see Phobius details amino acids 255 to 275 (21 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details amino acids 337 to 360 (24 residues), see Phobius details amino acids 366 to 390 (25 residues), see Phobius details amino acids 410 to 431 (22 residues), see Phobius details amino acids 441 to 460 (20 residues), see Phobius details amino acids 472 to 493 (22 residues), see Phobius details amino acids 513 to 544 (32 residues), see Phobius details amino acids 558 to 582 (25 residues), see Phobius details amino acids 597 to 619 (23 residues), see Phobius details PF04290: DctQ" amino acids 41 to 169 (129 residues), 80.3 bits, see alignment E=1.2e-26 PF06808: DctM" amino acids 209 to 617 (409 residues), 417 bits, see alignment E=8e-129 TIGR00786: TRAP transporter, DctM subunit" amino acids 218 to 621 (404 residues), 269.1 bits, see alignment E=3e-84

Best Hits

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_1600)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92PP2 at UniProt or InterPro

Protein Sequence (622 amino acids)

>SMc00266 transmembrane protein (Sinorhizobium meliloti 1021)
MTTTTEGVSEFAVLAETMEARPGSRLMRPVEALSAVLLVAIIAMLLSGVAFRYGLSRPIV
WIDEAASIAFLWLAMLGSAIAIDRCEHLRLTILLNALGERARQFTETLGMVAIMSFLLVL
LPAAYTYAAGEMDITSSALNIPAGYRAAAIAVGMVLMVLLAVAQLLRTAKPLDVVVSVAF
VLAVALVLWLLTPALSAFGNGNILIFLVGGAAVCLAMGVPIAFCFGIATLLFLAFTTSMP
LVVMIGRMDEGMSSLILLSVPVFVLLGCILDATGMGKAIVDFLASMLGHVKAGMSYVLLG
SLFLVSGISGSKVSDMATVAPALFPEMKRRGHKPKEMIALLATGAAMADTVPPSIVLIVL
GSVAGVSIAALFTSGFAIALVLLVALAALARIKAARENVDGVVRPSLKRIGGTALIAAPA
LVLPFIIRSAVASGAATATEVSTIAVVYAFIIGTVLYGGIGMRRTYRMLVETAAMSGAIL
LILGTAAAMAWALTQTGFAFELTDMMSGLPGGWFTFMLVSIALFMLLGCVLEGLPAIVLL
APIMFPIARAMGIHDVHYSMVIVTAMNVGLMAPPIGIGFYIACKIGNVSPDEAMGAIWPY
IGAMVLGLLLIAAVPWFSLALL