Protein Info for SMc00190 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2089 transmembrane" amino acids 118 to 142 (25 residues), see Phobius details amino acids 160 to 183 (24 residues), see Phobius details PF01442: Apolipoprotein" amino acids 218 to 389 (172 residues), 30 bits, see alignment E=4.3e-11 amino acids 293 to 463 (171 residues), 46.4 bits, see alignment E=3.9e-16 amino acids 392 to 491 (100 residues), 20.6 bits, see alignment 3.3e-08 amino acids 479 to 627 (149 residues), 30.2 bits, see alignment 3.7e-11 amino acids 632 to 799 (168 residues), 46.5 bits, see alignment E=3.7e-16 amino acids 721 to 896 (176 residues), 66 bits, see alignment E=3.8e-22 amino acids 905 to 1061 (157 residues), 29.8 bits, see alignment 5e-11 amino acids 1024 to 1149 (126 residues), 21.9 bits, see alignment 1.3e-08 amino acids 1146 to 1294 (149 residues), 24.4 bits, see alignment 2.3e-09 amino acids 1307 to 1481 (175 residues), 21.8 bits, see alignment E=1.4e-08 amino acids 1500 to 1695 (196 residues), 55.2 bits, see alignment E=7.7e-19 amino acids 1709 to 1854 (146 residues), 19.4 bits, see alignment 7.6e-08

Best Hits

KEGG orthology group: None (inferred from 76% identity to rhi:NGR_c16680)

Predicted SEED Role

"Kinesin-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92K98 at UniProt or InterPro

Protein Sequence (2089 amino acids)

>SMc00190 hypothetical protein (Sinorhizobium meliloti 1021)
MATKKTNESIDEKAFQALEAALKIDFDDLKSALNDETSLEEPVPENVSETARQAAGSGEA
RAARAQQEAPKPARGAEAPRSFASEMAPKQPPLAPANDDTRKSPAAMLRSLEVRSSRAAI
RVAAIISLVWTVAGLGVAHLLYAPGIWQIRSLGDLAAMPGAIGILLGIALPVMLFFSFAI
MIARAQELRSAARSMAEVAMRLAEPETNAADRVMTVGQAVRREVSAMNEGIERTIARATE
LEALVHSEVSALERSYSENELRVRTLVQELGLEREAIIGHSDRIRTAIAGAHTKLKDDLE
TASEDIASRIAVSGEAFASLIDTRAAALTDKSDHALENLSTMLTTRTDALLSGLTTAGVA
LSNEFDARLDALSDNLTQRGEQLLSQFETRASTLDANTEKLNAALNERARQLNETLIART
RDLNESLRIGQQAISGGLDDVLSSLNSALDEKGASFRQSLKSSADDAIMDLDLRGGFFEE
KLQTTVGQLASAFDERFHEFASAFDKRASQLDTKLMESLHRINETVSGGSEAIGGALDSS
VDKINSALSEQSLTLATALGATQDFIEETIGSRTSELSSLIGNAHNRIESVLSDKTGSLM
GALTEAQERIENGFGQRADALANALTTSERSLTDGLDSRTSAFIEGLQSAHARIEQTLTG
STDEITSAIAASQHRLDNTLSERTAALSTALTSGASVIESAVGGTADRLERVLSERGQTI
TDALSTQTAALDGVLAERATQINSTMSARASEMADSLSRHAEDVADSLTFRAMAVAETMT
DRVGEIENKLSQSVSEVAENLGGRVSLIADTLTDTSARIAEDLSSRVGKISETLAGTSAE
IAEALTARTSEATASLAGKAAEIEQTLTGRASHLRDTLTTTHDQIRSTLDDRITAINLAV
GQGREQLEELLSDQSMAMATTLATSASMLEMSLEERQASIAGAIERSTEALAARTSEATA
SLADKATEIDRTLSGKAAQLRDTLATTHEQLRTTLDDRINTINLSVGQGRERLEELLSDQ
SIAMATTLATSASMLEMSLEERQASIAGAIDRSAEALDSRMRSTTGEIAERLAETADQIS
LAADTLTNRVDISISGVNSRLDETGARIETSLGSLEERIRGSVGDVDAILGETGSRIETS
LGSLEERIRGSVGDVDAILGDTGARIETSLGSLEERIRDSVGSVNAIVDNAGQRIADSLG
ERAGEIDRISEAAATRISTAIETGTGRIEERLGTMDRALNIGLENVNRTIEGKAAALVTS
LRGAVSDATQEIDAEAARSAGLLSKAGADFAGALAASNAEFASSIEQTASATAARHADLA
RSVAEAADTATARLASTNSQIATHAKSIQQSLTEAEKALDARGQSIRSTLDESTRELNSM
LAGRSMELSRLLDEQARPVIEQYAATGKEAAERIASLTQESADRLRAENAALINAITERT
GETLDAISLRAEETAKAMKMVENRLQSTAMGLIDQLASSNSAIATVIDQASGNLGDMDQR
LEATAAKVSETARQASDMLSTSTRLIEGKVDKLSDISSSTLSQIGGIVGRFEDHSKVLGQ
ASDLLAAAQSNLVSTLEERQDALRTLSVGLVQRSEEIERTMRALEGFVDGAFQRAEERSG
QVAGNLRSGIQSSFSDVGRLLSNTEQRATEAAEALRDTLVKASDEAAASVEGVFSQAEER
SRQIADRLRSGVETSFADANKTLSQVEGRALSASEALRQVMAKTGEEAGQALEGAFASVE
ERAKDAASRLRGTIGASVSDVERMLAESGKKSDGVAAQLREAVRQAIEDAIGRFNGATDD
IRRSAGEIRKELDMTREELKRGAFDLPEEAKENAALMRRAVGEQIKALQELSEIIGKSSS
QLEVAQPVRQQEAPAAPAARVVAPQAAAPQVAAPQPAAPQPAPNAALRGSLGIEQATRPL
QPARPPATEERAEEGGGWMRDLLRAASREEEPAAARPRSAESQPVAKAGDSRNPRHVVES
LNSLSVDIARAIDHDASVELWRRYQRGERDVFTRRLYTLKGQQTFDEIKRKYDREPEFRT
AVDRYIADFEKLLADVARNDPDKRITQTYLTSDTGKVYTMLAHAAGRFS