Protein Info for SMa5025 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 143 PF13489: Methyltransf_23" amino acids 3 to 129 (127 residues), 34.9 bits, see alignment E=4.5e-12 PF01135: PCMT" amino acids 12 to 63 (52 residues), 22.5 bits, see alignment E=3.1e-08 PF05175: MTS" amino acids 12 to 93 (82 residues), 26.1 bits, see alignment E=2.2e-09 PF13847: Methyltransf_31" amino acids 19 to 131 (113 residues), 42.8 bits, see alignment E=1.6e-14 PF13649: Methyltransf_25" amino acids 24 to 126 (103 residues), 48.4 bits, see alignment E=4.6e-16 PF08242: Methyltransf_12" amino acids 25 to 127 (103 residues), 38 bits, see alignment E=8.3e-13 PF08241: Methyltransf_11" amino acids 25 to 129 (105 residues), 31.4 bits, see alignment E=8.5e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa5025)

Predicted SEED Role

"probable methyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B3KLX3 at UniProt or InterPro

Protein Sequence (143 amino acids)

>SMa5025 hypothetical protein (Sinorhizobium meliloti 1021)
MAKDLSPRLLAIVDALPLRRGMRVLEIGCGPGAMAREIAGRIGDGHVLAIDRSAKAIAQA
QAASQAEIGSGRLSLRQVAAEDFELEAGEMPYDIAVAVRVGALDGRHPEAGRRAKRRVAA
ALTPQGQLLIDGGDPLRRLLLDD