Protein Info for SMa2410 in Sinorhizobium meliloti 1021

Annotation: RhbF rhizobactin siderophore biosynthesis protein RhsF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 601 transmembrane" amino acids 493 to 510 (18 residues), see Phobius details PF04183: IucA_IucC" amino acids 145 to 391 (247 residues), 232.8 bits, see alignment E=4.4e-73 PF06276: FhuF" amino acids 412 to 574 (163 residues), 154.5 bits, see alignment E=3.6e-49

Best Hits

Swiss-Prot: 100% identical to RHBF_RHIME: Rhizobactin siderophore biosynthesis protein RhbF (rhbF) from Rhizobium meliloti (strain 1021)

KEGG orthology group: None (inferred from 100% identity to sme:SMa2410)

MetaCyc: 100% identical to rhizobactin 1021 core synthase (Sinorhizobium meliloti Rm2011)
6.3.2.-

Predicted SEED Role

"Siderophore synthetase superfamily, group C @ Siderophore synthetase component, ligase"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q9Z3Q7 at UniProt or InterPro

Protein Sequence (601 amino acids)

>SMa2410 RhbF rhizobactin siderophore biosynthesis protein RhsF (Sinorhizobium meliloti 1021)
MLMHHDPLLPGAFSEELWQQVSKRLLAKVIEEFAYERVFGVVEEKPGHYRIDIDELQYRF
KAKRYVFDNLSVDPASLFKRHGNSDAPLHDPLAFCAEVLPKLGVKPMTVAHFIKELGNTL
VSDAHIAARASKTGAELAELDDICMEGETTGHPWVTVSKGRIGLGYSDYLAFTPENRTPT
EVLWLGVSKERASFIAEETLTNEGLVREAVGVSRFESFCAKLAARGGSVDTHYMMPVHPW
QWDHMIVPHFAADIAAGHIVFLGKGDDLYLPQQSVRTLSNISHPEKSTLKLCMTILNTAV
YRGIPGKRALTAAPLTTWLDQLLARDQFLSEECGLVLLGERAGMHYVHPQFSTIEGAPYQ
FNEMLGCMWRDSLSAHLKSGETGLPLAALLHAGTDGKPVVQALAEKSGMTVSEWTARLFD
VVIPPVFHLLAKHGLAFSAHGQNATLILKNGRPERLALRDFIDDVIVCDQAFPESATLPE
EVRAVLLCLPADFLIHFIQTTLFICVFRYMSVLLDQRSGLPEHAFWGLARSSILAYQKRF
PEMASRFATFDLFGDEYPRLCLNRVRLFTHGYADDDERPVPDFQGMVDNPLVAFDKRSNA
A