Protein Info for SMa2171 in Sinorhizobium meliloti 1021

Annotation: Transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 545 PF13007: LZ_Tnp_IS66" amino acids 47 to 119 (73 residues), 39.4 bits, see alignment E=1.7e-13 PF13005: zf-IS66" amino acids 134 to 177 (44 residues), 54.7 bits, see alignment 2.2e-18 PF03050: DDE_Tnp_IS66" amino acids 192 to 488 (297 residues), 318.4 bits, see alignment E=9.4e-99 PF13817: DDE_Tnp_IS66_C" amino acids 495 to 532 (38 residues), 67.8 bits, see alignment 1.5e-22

Best Hits

KEGG orthology group: K07484, transposase (inferred from 100% identity to sme:SMa2171)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92XR2 at UniProt or InterPro

Protein Sequence (545 amino acids)

>SMa2171 Transposase (Sinorhizobium meliloti 1021)
MVVRMMSNASQNLPDDPAFLKAMIAALQAENAKMSATLQAHDQLIGELRLRIAKLKKQVF
GKSSEKIEREIQQLELALEDLLIAAAENSTKPLDEVDAAVPAAPVASRPEKTMRRRPRVS
EKAARERKELDPGTCCPDCGGELRLVGEDASEILDMIAAQMKVIEVARLKKSCRCCEKMV
QLPAPSRPIPGSMAGAGLLAYILVSKFDDHLPLYRLNEIFARMGADIPDSTLVDWCGRAM
QVLQPLIERIEAVVMSSDLLHADDTPIRVLDRSLRDKGLGKGVKKGRIWTYVRDQRPWAG
AAPPGAVYYFAPDWKEEHVHHHLRQTSGILQADGYKGYGKLYEPGADGIGRFREAACWAH
WRRDFHDIWTSNKSEIAREALDRIGALYDIERDIAGQPADIRLAARQKHSTAKVEALRVW
AEAQLTRIPGKGDLASAFRYGLSRWHSFCLFLEDGRVAMDNNAAERALRPIGIGRKNWLF
AGADTGAETLARAMTIIETAKMNGIDPQAYLADVLDRIHDHKINRLDELLPWNWAPVAII
CAEAA