Protein Info for SMa1864 in Sinorhizobium meliloti 1021

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 551 PF00005: ABC_tran" amino acids 26 to 184 (159 residues), 93.6 bits, see alignment E=1.1e-29 amino acids 302 to 452 (151 residues), 105.7 bits, see alignment E=2e-33 PF08352: oligo_HPY" amino acids 236 to 268 (33 residues), 23 bits, see alignment (E = 4.9e-08) amino acids 512 to 538 (27 residues), 22.3 bits, see alignment (E = 8.2e-08)

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein K02032, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to sme:SMa1864)

Predicted SEED Role

"FIG01076262: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92Y61 at UniProt or InterPro

Protein Sequence (551 amino acids)

>SMa1864 ABC transporter ATP-binding protein (Sinorhizobium meliloti 1021)
MGNLVEIRDLKVEATTDTGRRVEIIKGVSLDVAEGEIVALIGESGSGKTTIALTLMGYAR
PGCRISGGSVLVAGNDLVTLTEKQRAKVRGTEVTYVPQSAAAAFNPAATIMDQVIEVTRI
HGLMAAAEARARAVELFRALSLPEPETIGSRYPHQVSGGQLQRLSAAMALISDPKLVIFD
EPTTALDVTTQIEVLRAFKSVMKKGGIAGVYVSHDLAVVAQIADHIVVLKGGEVQEVGTT
EEILSSAKHPYTRELLSAFEPKPREAADAAERAPAPLLKIENLVAGYGASKTDGLPLVRA
VEDVSLKVEKGRNLGIIGESGCGKSTLARAIAGILPAAVGKIVFDGKELGRSARERTRDQ
LREMQIVFQYADTALNPAKSVEDILDRPLVFYHGMNARARSLRIDELLDMVRLPRNLRHR
RPGELSGGQKQRVNFARALAADPKLILCDEITSALDTVVAAAVIELLKELQRELGLSYIF
ISHDLSLVEAICDEIVVMYGGKKVEDITPAKINAPHHPYSQLLFSSVPKLDPSWLDGLEQ
DPELVRAYCRR