Protein Info for SMa1779 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 148 PF00106: adh_short" amino acids 53 to 141 (89 residues), 44.8 bits, see alignment E=1.1e-15 PF13561: adh_short_C2" amino acids 60 to 141 (82 residues), 43.5 bits, see alignment E=3e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa1779)

Predicted SEED Role

"putative short-chain dehydrogenase/reductase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92YA3 at UniProt or InterPro

Protein Sequence (148 amino acids)

>SMa1779 hypothetical protein (Sinorhizobium meliloti 1021)
MRSDSRPHTYALGHHGFSGEWASLGFVVHDPYGSERMDLALTGVDGRSDRTSSRTSDGVD
RVAADIVEAGGAAIGIVCEVGELDQITAAVDQVVAAYGRIDILVNNAAGRSAVLSTILDL
SIEQLQRNFDTGAIAYIRFMQSGGLRLL