Protein Info for SMa1666 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 159 transmembrane" amino acids 10 to 33 (24 residues), see Phobius details amino acids 60 to 82 (23 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 132 to 150 (19 residues), see Phobius details PF03350: UPF0114" amino acids 7 to 119 (113 residues), 69.4 bits, see alignment E=1.6e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa1666)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92YG8 at UniProt or InterPro

Protein Sequence (159 amino acids)

>SMa1666 hypothetical protein (Sinorhizobium meliloti 1021)
MISFFLGIRYIMILASIGVLGGALLMFLEGALLLRNAFTFVRTEPELSVTAAVLRATDKF
LFGIVLTIFGYAITFGFVIDVSDEIRKRVPRWMILNTVAEMKILFIEVIILYLVVHFATV
VAETEGMLDWNGLVLPGAALLLAAAMKLVASSTHDLGPK