Protein Info for SMa1582 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 transmembrane" amino acids 23 to 41 (19 residues), see Phobius details amino acids 62 to 84 (23 residues), see Phobius details amino acids 98 to 116 (19 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 164 to 191 (28 residues), see Phobius details amino acids 211 to 230 (20 residues), see Phobius details amino acids 232 to 232 (1 residues), see Phobius details amino acids 234 to 238 (5 residues), see Phobius details amino acids 241 to 265 (25 residues), see Phobius details PF21088: MS_channel_1st" amino acids 210 to 251 (42 residues), 27.3 bits, see alignment 4.4e-10 PF00924: MS_channel_2nd" amino acids 253 to 318 (66 residues), 66.8 bits, see alignment E=2.3e-22 PF21082: MS_channel_3rd" amino acids 326 to 411 (86 residues), 38.7 bits, see alignment E=1.7e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa1582)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92YL3 at UniProt or InterPro

Protein Sequence (432 amino acids)

>SMa1582 hypothetical protein (Sinorhizobium meliloti 1021)
MDFMQMVRPLEIWLRTFVLSEWTFYQLGIIAAGYVFASFVASRTEPAMESRARRIKGNPD
LLRVIIAFMRRLKWLFLTLWLWLASVILKQGTWPSQRWLIATALSLAAAWFIISVLTKII
RNPTLSRLVAMVSWGYLAVYATGLDGPILSALDAAAVNLGVMRLSLLIVLKAVVLTVALI
WVAVFVGNVLAHWVQRSGDLSPSFKVLISKVIKIALIMIAGAIALSATGIDLTALTVFSG
AVGVGVGFGLQKVVSNFISGIIILLDKSIKPGDTITLGETFGSIRDLRARFVSVITRDGK
EYLIPNEDFISQQVVNWSFSSDYVRIDVDFGTSYDSDPHEVVRIAVETASAVPRVVNDYN
APVCWMTAFGASSLDFRLRFWISDPANGLTNVRGQVLMALWDSFKEAGVSIPFPHREIIM
KTPVEIQRPPRG