Protein Info for SMa1365 in Sinorhizobium meliloti 1021

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 124 PF08352: oligo_HPY" amino acids 60 to 102 (43 residues), 37 bits, see alignment E=1.9e-13

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to sme:SMa1365)

Predicted SEED Role

"Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92YW5 at UniProt or InterPro

Protein Sequence (124 amino acids)

>SMa1365 ATP-binding protein (Sinorhizobium meliloti 1021)
MTTGRPSDRTTDGLQAQILELLRDLQREPGMALIMITHDLKVAAAMADDRIIVMNGGKVV
ESGKAEDVFTNPSHAYTRRLMSAVPHADAPKAPRNAAQGEVLLACVQCWICPNRTRRRFP
HDEA