Protein Info for SMa1355 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 signal peptide" amino acids 12 to 19 (8 residues), see Phobius details amino acids 35 to 36 (2 residues), see Phobius details transmembrane" amino acids 20 to 34 (15 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details amino acids 95 to 118 (24 residues), see Phobius details amino acids 138 to 159 (22 residues), see Phobius details amino acids 179 to 206 (28 residues), see Phobius details amino acids 226 to 249 (24 residues), see Phobius details PF06724: DUF1206" amino acids 13 to 77 (65 residues), 51.9 bits, see alignment E=3.3e-18 amino acids 96 to 164 (69 residues), 39.7 bits, see alignment E=2.1e-14 amino acids 186 to 254 (69 residues), 69.2 bits, see alignment E=1.3e-23

Best Hits

Swiss-Prot: 32% identical to YXXB_BACSU: Uncharacterized protein YxxB (yxxB) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 100% identity to sme:SMa1355)

Predicted SEED Role

"FIG00986753: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92YX1 at UniProt or InterPro

Protein Sequence (282 amino acids)

>SMa1355 hypothetical protein (Sinorhizobium meliloti 1021)
MPSRFRFDVLAKAGYTARGVVFILVAGLALFSGVTGGQPEMKSALLTLLGQPFGRVWVGL
IGLGLLGFIAWRLAQSLADSDGHGSGRKGLTVRSALFGSAAIYLGLAVYALGHALFFAGG
DQESGEKGLAEWIMSKPFGSYLAIAVGIGFIVGGVVTAYKGLTRKFERYLRIPDRNRVLT
LICIYGLVARGAVFVIIGILFAYAGFRVDPEQAGSISDALEWLRQLPFGSILYIAVAAGI
AAFGIYNLVEARYRVVRGPDLTAVKQPISRRKSDPTQPARPN