Protein Info for SMa1162 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 225 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 65 to 86 (22 residues), see Phobius details amino acids 94 to 110 (17 residues), see Phobius details amino acids 117 to 145 (29 residues), see Phobius details amino acids 167 to 188 (22 residues), see Phobius details amino acids 194 to 213 (20 residues), see Phobius details PF06912: DUF1275" amino acids 22 to 208 (187 residues), 100.7 bits, see alignment E=5e-33

Best Hits

Swiss-Prot: 80% identical to Y4105_RHIME: UPF0700 transmembrane protein RA0705 (RA0705) from Rhizobium meliloti (strain 1021)

KEGG orthology group: None (inferred from 100% identity to sme:SMa1162)

Predicted SEED Role

"Miscellaneous; Unknown"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92Z61 at UniProt or InterPro

Protein Sequence (225 amino acids)

>SMa1162 hypothetical protein (Sinorhizobium meliloti 1021)
MTIQRRRRLIKRQRSSVGLALVAAISFLAGMTDAMGLMSLGDFVSFMSGNTTRASVALIQ
ADVARGVLLIGGLSTFVIGNAVGVMVSIRFRPHSVLLFVSVLLACAALLADRREMQFLLL
ILAMGAINASVEQIEGLPVGLTYVTGALSRFGRGLGRWVMGIRNTHWVIQIVPWLGMMAG
AISGAALVQEIGSLALWIPSAAALLLTAVAIQIPRRWQSRFIQHR