Protein Info for SMa1053 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 45 to 64 (20 residues), see Phobius details amino acids 71 to 93 (23 residues), see Phobius details amino acids 114 to 134 (21 residues), see Phobius details

Best Hits

Swiss-Prot: 60% identical to Y1892_XYLFT: UPF0394 membrane protein PD_1892 (PD_1892) from Xylella fastidiosa (strain Temecula1 / ATCC 700964)

KEGG orthology group: K07112, (no description) (inferred from 100% identity to sme:SMa1053)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92ZC0 at UniProt or InterPro

Protein Sequence (136 amino acids)

>SMa1053 hypothetical protein (Sinorhizobium meliloti 1021)
MSAYLPSLAGGMLIGASAVMLLLLNGRIAGISGIVGRLLQGVGMTTNLAFVLGLLLGPLA
YLLMFGSWPAVQITAGWPLIIIAGLLVGFGSRMGSGCTSGHGVLGLARVSPRSMVAVATF
LTAGVAAVALLRGLAL