Protein Info for SMa0937 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 719 signal peptide" amino acids 1 to 52 (52 residues), see Phobius details transmembrane" amino acids 141 to 163 (23 residues), see Phobius details amino acids 184 to 203 (20 residues), see Phobius details amino acids 209 to 232 (24 residues), see Phobius details amino acids 259 to 282 (24 residues), see Phobius details amino acids 288 to 306 (19 residues), see Phobius details amino acids 319 to 336 (18 residues), see Phobius details amino acids 342 to 360 (19 residues), see Phobius details amino acids 387 to 408 (22 residues), see Phobius details amino acids 420 to 441 (22 residues), see Phobius details amino acids 475 to 496 (22 residues), see Phobius details amino acids 502 to 522 (21 residues), see Phobius details PF21088: MS_channel_1st" amino acids 479 to 519 (41 residues), 24.1 bits, see alignment 4.3e-09 PF00924: MS_channel_2nd" amino acids 520 to 585 (66 residues), 52.6 bits, see alignment E=5.9e-18 PF21082: MS_channel_3rd" amino acids 591 to 678 (88 residues), 27.9 bits, see alignment E=3.9e-10

Best Hits

KEGG orthology group: K03442, small conductance mechanosensitive channel (inferred from 100% identity to sme:SMa0937)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92ZH9 at UniProt or InterPro

Protein Sequence (719 amino acids)

>SMa0937 hypothetical protein (Sinorhizobium meliloti 1021)
MRPPAWVSRPSITGAKDWKQMSAVFKHGDRGLAAIVLCLQLVFGLAATVAAQEPATATAP
PAKVQQLIELLDDPEVRQWLTAKQAAAPAAATTPAGLASQWIAEIRRHLGGIRNAVPRVV
PEWMAARERIAAEMHQGTMPILRGFAFLLLAGYGAEFLLRYLLRRSASRSLAQFGPGLDA
LLRIAPLVVFAIAAIAAFVLAGWPRRLEVAVAPLLIAWIAARLLVAIAAAVFKPAEDGRA
LEGGVSLTPGAAHFWHRRFVLFACSVAFLWAVIDVMQALAFPADVRDLTAAALGLVVLGL
AIDTVLRRPVAEMSAGRRIMRNALLIGFLVLLWLVWVAGMKVLFWLGIYVLGLPPLLRFT
SATTRTMLDAEAADNVRVMRNVLIDRGARFAIIGLAAAWLAVVFRINGSAMMQDDVFNRI
FRGLLAGVVILLAADLIWQLAKGFIDLHLRRASVNGAADSAQLARSMRLRTLLPILRNFL
AVFIAVVAGMMVLSGLGVHVGPLIAGAGVFGVAIGFGSQTLVKDILSGVFYMMDDAFRVG
EYIQSGSYKGTVESFSIRSVKLRHHRGPVFTVPFGSLGAVQNMSRDWVIDKFMINVSYDA
DVAKVKKVVKGIGAALLDDPELGPLIIETVKMKGVEQFGDYGITLSFAMTTKPGHQTQIR
RRAQAMIKDAFAANSIHFASPTVQVAGDEAQATAAAAATRDAIAKRNAAAAQKGETAAE