Protein Info for SMa0866 in Sinorhizobium meliloti 1021

Annotation: NodC N-acetylglucosaminyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 290 to 305 (16 residues), see Phobius details amino acids 311 to 330 (20 residues), see Phobius details amino acids 336 to 355 (20 residues), see Phobius details amino acids 362 to 383 (22 residues), see Phobius details TIGR04242: chitooligosaccharide synthase NodC" amino acids 3 to 395 (393 residues), 750.6 bits, see alignment E=1.8e-230 PF13641: Glyco_tranf_2_3" amino acids 49 to 283 (235 residues), 89.5 bits, see alignment E=8.6e-29 PF00535: Glycos_transf_2" amino acids 53 to 221 (169 residues), 106.5 bits, see alignment E=3.6e-34 PF13506: Glyco_transf_21" amino acids 122 to 283 (162 residues), 43.5 bits, see alignment E=6.4e-15 PF03142: Chitin_synth_2" amino acids 127 to 382 (256 residues), 78.3 bits, see alignment E=1.3e-25 PF13632: Glyco_trans_2_3" amino acids 136 to 339 (204 residues), 79.3 bits, see alignment E=9e-26

Best Hits

Swiss-Prot: 100% identical to NODC_RHIME: N-acetylglucosaminyltransferase (nodC) from Rhizobium meliloti (strain 1021)

KEGG orthology group: None (inferred from 100% identity to smk:Sinme_6326)

Predicted SEED Role

"Nodulation protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See P04341 at UniProt or InterPro

Protein Sequence (426 amino acids)

>SMa0866 NodC N-acetylglucosaminyltransferase (Sinorhizobium meliloti 1021)
MYLLDTTSTAAISIYALLLTAYRSMQVLYARPIDGPAVAAEPVETRPLPAVDVIVPSFNE
DPGILSACLASIADQDYPGELRVYVVDDGSRNREAIVRVRAFYSRDPRFSFILLPENVGK
RKAQIAAIGQSSGDLVLNVDSDSTIAFDVVSKLASKMRDPEVGAVMGQLTASNSGDTWLT
KLIDMEYWLACNEERAAQSRFGAVMCCCGPCAMYRRSALASLLDQYETQLFRGKPSDFGE
DRHLTILMLKAGFRTEYVPDAIVATVVPDTLKPYLRQQLRWARSTFRDTFLALPLLRGLS
PFLAFDAVGQNIGQLLLALSVVTGLAHLIMTATVPWWTILIIACMTIIRCSVVALHARQL
RFLGFVLHTPINLFLILPLKAYALCTLSNSDWLSRYSAPEVPVSGGKQTPIQTSGRVTPD
CTCSGE