Protein Info for SMa0684 in Sinorhizobium meliloti 1021

Annotation: transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 signal peptide" amino acids 9 to 11 (3 residues), see Phobius details transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 42 to 63 (22 residues), see Phobius details amino acids 87 to 113 (27 residues), see Phobius details amino acids 125 to 143 (19 residues), see Phobius details amino acids 155 to 174 (20 residues), see Phobius details amino acids 187 to 206 (20 residues), see Phobius details amino acids 227 to 249 (23 residues), see Phobius details amino acids 275 to 295 (21 residues), see Phobius details amino acids 321 to 342 (22 residues), see Phobius details amino acids 351 to 376 (26 residues), see Phobius details amino acids 385 to 405 (21 residues), see Phobius details amino acids 411 to 428 (18 residues), see Phobius details PF13520: AA_permease_2" amino acids 10 to 407 (398 residues), 174.2 bits, see alignment E=4.6e-55 PF00324: AA_permease" amino acids 18 to 408 (391 residues), 96.9 bits, see alignment E=1.2e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa0684)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92ZT6 at UniProt or InterPro

Protein Sequence (441 amino acids)

>SMa0684 transport protein (Sinorhizobium meliloti 1021)
MSAPSSGKSLGLAACTAIVVGNMVGSGFYLSPAAVAPYGNLAIVIWIVMGAGAICLGLTF
ARLAKLSPAVGGPYAYTRLAYGDFPGFLIAWGYWISIWASLPVIAVAFAGVVIDFFPFLR
GRGTATLLTLSVIWLVVLVNLRGVHAAGLFSEITTYAKMIPFGAVALLGLFYIDFSHFAD
FNPSGQPLLQASAALAPLTMFAYLGLESATVPAGDVRDAERTIPRSTVLGIAIAVTLYVL
GTIVVMGLVPREELVHSVAPFSEAARRMWGPAGELAISLAVVLSSIGALNGWTLLMGQVP
MAAARDGLFPPLFSRLSARHVPATGIVVSATLATILVLVQAAGSEGFSSIYRLFVGLSTM
TAVIPYAFCALASSLVSARVSGGTLIPRVTLIELVGFTFAIFTLYGCGAEPVLYGLVLLL
LSIPVYIWQRRRSFVPGDFGQ