Protein Info for SMa0665 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 transmembrane" amino acids 37 to 70 (34 residues), see Phobius details amino acids 80 to 105 (26 residues), see Phobius details amino acids 173 to 199 (27 residues), see Phobius details amino acids 229 to 251 (23 residues), see Phobius details amino acids 258 to 284 (27 residues), see Phobius details amino acids 290 to 308 (19 residues), see Phobius details amino acids 313 to 360 (48 residues), see Phobius details PF01594: AI-2E_transport" amino acids 35 to 356 (322 residues), 101 bits, see alignment E=3.9e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa0665)

Predicted SEED Role

"FIG01074946: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92ZU7 at UniProt or InterPro

Protein Sequence (384 amino acids)

>SMa0665 hypothetical protein (Sinorhizobium meliloti 1021)
MDDNPSSQRNPDPVNPAARPSIEPRITEIARIGLVGLFAYWSFTLIAPFAIILIWAAILA
VALYPAYAALSAILGQRPRVAALVITMLGLLVIVAPLAAIAFSFAEGLQVVLARLNDRSL
LISAPPDSIRSFPLIGERIYSVWSMASDNLEAVLQQIKPALLQAGSKALGKIASIGADLL
SFVVSVLVAGFLFGSGARLANSAQGFASRMGGDRGVGFLQLAAATIRNVARGVIGVALLQ
AFLCILILSLFKVPAPGAIAFVVLILCIIQIGPALALLPVIVWAWTSMEFGMAALFTILL
IPLLIIDNVMKPILVARGLSTPTLVILLGVLGGTLSYGLIGLFLGPIVLSVFHSLLLIWM
NTDTVGSEGLRLGNPDYRIRREKT