Protein Info for SMa0630 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 523 transmembrane" amino acids 15 to 36 (22 residues), see Phobius details amino acids 66 to 90 (25 residues), see Phobius details amino acids 98 to 117 (20 residues), see Phobius details amino acids 129 to 164 (36 residues), see Phobius details amino acids 186 to 212 (27 residues), see Phobius details amino acids 225 to 246 (22 residues), see Phobius details amino acids 282 to 301 (20 residues), see Phobius details amino acids 307 to 329 (23 residues), see Phobius details PF21088: MS_channel_1st" amino acids 285 to 326 (42 residues), 26.6 bits, see alignment 7.2e-10 PF00924: MS_channel_2nd" amino acids 327 to 392 (66 residues), 52 bits, see alignment E=9.2e-18 PF21082: MS_channel_3rd" amino acids 398 to 485 (88 residues), 39.3 bits, see alignment E=1.1e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa0630)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92ZW7 at UniProt or InterPro

Protein Sequence (523 amino acids)

>SMa0630 hypothetical protein (Sinorhizobium meliloti 1021)
MASVGSFLAFEWPPLLRKIILTLLLAVIVFRVVRAIGKLLFALSGASGIADQPPSVFESD
AARRFWLSRISIIAGFLLFGWAIASLMPALSFSNEVTRLAAFLFGLGILVTAVEVVWRRP
DKPAPLVVKSLLTIYLVVLWSAWVAGLLGLLWLGIYSLLLPPLVRGVGDVAQALATRAQR
TGPPGIVLSVVIVRGARAAVIAAAVAWLAYIWRIRAAALAGSEPGAIVIPGLLNGIIALL
VADLLWQMSKALIAYRMGLGPKDGSNVDELARSGRLRTLLPIFRNVLAVFIGAVTVLTIL
SGLGVQIAPLIAGAGIFGVAIGFGSQTLVKDVLSGVFYMLDDAFRVGEYIQSGSYKGTVE
SFSLRSVRLRHHRGPIFTVPFGELGAVQNMSRDWVIDKMTLNVTYDADVDLARKLIKKVG
QELAADPEFAADTIEPLKMQGVDSFGDFAIVLRMKLMTKPGAQFTIKRRAFMMIKKAFDE
NGIKIAVPTVHVSGGSDNAAAAQQALNMSKAAELAANKAPVGL