Protein Info for SMa0620 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 transmembrane" amino acids 50 to 71 (22 residues), see Phobius details amino acids 77 to 99 (23 residues), see Phobius details amino acids 122 to 152 (31 residues), see Phobius details amino acids 174 to 197 (24 residues), see Phobius details amino acids 207 to 224 (18 residues), see Phobius details amino acids 230 to 256 (27 residues), see Phobius details PF09955: DUF2189" amino acids 79 to 204 (126 residues), 121.1 bits, see alignment E=1.8e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa0620)

Predicted SEED Role

"putative cytochrome c oxidase, subunit I"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q92ZX4 at UniProt or InterPro

Protein Sequence (268 amino acids)

>SMa0620 hypothetical protein (Sinorhizobium meliloti 1021)
MSGTGKLQRWVGEVSGIEETWNPKWQRHLPAQAPFEWLAKGWRDLITYPMLSLSYGVAVF
VVSFLIIWLLFATGRDYFLFPAVAGFMIIAPLLATGLYLKSSRLERSEPVSLGSMLRVRP
VAGAQVFFTGLLLCMLMLLWMRAAVLVYALFFGVRPFPGLGHITQLLLTTPTGWAMLAVG
IFIGALFAGFSFAISVFSIPMLLDQRIDAFTAMGVSVALVWNNLRPMLVWGAIVLGMFLV
SVATAMIGLVVIFPLLGHATWHAYRAVR