Protein Info for SMa0383 in Sinorhizobium meliloti 1021

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 532 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 53 to 74 (22 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 108 to 129 (22 residues), see Phobius details amino acids 148 to 172 (25 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 229 to 248 (20 residues), see Phobius details amino acids 260 to 281 (22 residues), see Phobius details amino acids 292 to 311 (20 residues), see Phobius details amino acids 317 to 339 (23 residues), see Phobius details amino acids 351 to 372 (22 residues), see Phobius details amino acids 378 to 397 (20 residues), see Phobius details PF05977: MFS_3" amino acids 9 to 529 (521 residues), 797.5 bits, see alignment E=4.9e-244 PF07690: MFS_1" amino acids 23 to 366 (344 residues), 112.5 bits, see alignment E=2.2e-36

Best Hits

KEGG orthology group: None (inferred from 100% identity to sme:SMa0383)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q930J1 at UniProt or InterPro

Protein Sequence (532 amino acids)

>SMa0383 hypothetical protein (Sinorhizobium meliloti 1021)
MSAAKSSGGTFAPLAQPVFAVLWTATVLGNTGSFMRDVASAWLMTDLSASPAAVAMVQAA
GTLPIFLLAIPAGVLTDILDRRKFLIAVQLLLASVSISLMVLSQTGMLSVSSLIGLTFLG
GIGAALMGPTWQAIVPELVKREDVKSAVALNSLGINIARSIGPAAGGLLLAAFGAGITYG
ADVASYIVVIAALVWWPRAKNANDALQENFFGAFRAGLRYTRSSTPLHVVLLRAAIFFAF
ASAVWALLPLVARQLLGGDAGFYGILLGAVGAGAIGGALVMPKLRERLSSDGLLLGAALI
TAAVMGVLALAPPKVVAIIVLLFLGGAWITALTTLNGTAQSVLPNWVRGRGLAVYLTVFN
GAMTAGSLGWGAVGEAVGIQSTLIIGAIGLLIAGLIMHRVKLPAGDADLVPSNHWPEPLV
AEPIAHDRGPVLILIEYKVEKQHRTAFLHAIDHLSRERRRDGAYGWGVTEDSADPEKIVE
WFMVESWAEHLRQHKRVSNADADLQGKVLAYHVGPDKPVVRHFMTINRPGAA